SCALA, GIOVANNI
SCALA, GIOVANNI
DIPARTIMENTO DI BIOLOGIA
CpG islands under selective pressure are enriched with H3K4me3, H3K27ac and H3K36me3 histone modifications.
2013 Akhtar, Mm; Scala, Giovanni; Cocozza, Sergio; Miele, Gennaro; Monticelli, A.
Evidence for Evolutionary and Nonevolutionary Forces Shaping the Distribution of Human Genetic Variants near Transcription Start Sites
2014 Scala, Giovanni; Affinito, Ornella; Miele, Gennaro; Antonella, Monticelli; Cocozza, Sergio
A distinct group of CpG islands shows differential DNA methylation between replicas of the same cell line in vitro
2013 Cocozza, Sergio; Scala, Giovanni; Miele, Gennaro; Imma, Castaldo; Antonella, Monticelli
Simulating gene-gene and gene-environment interactions in complex diseases: Gene-Environment iNteraction Simulator 2
2012 Pinelli, Michele; Scala, Giovanni; Amato, Roberto; Cocozza, Sergio; Miele, Gennaro
Continuous and discontinuous phase transitions in the evolution of a polygenic trait under stabilizing selective pressure
2017 Fierro, Annalisa; Cocozza, Sergio; Monticelli, Antonella; Scala, Giovanni; Miele, Gennaro
Tracking the evolution of epialleles during neural differentiation and brain development: D-Aspartate oxidase as a model gene
2016 Florio, Ermanno; Keller, Simona; Coretti, Lorena; Affinito, Ornella; Scala, Giovanni; Errico, Francesco; Fico, Annalisa; Boscia, Francesca; Sisalli, MARIA JOSE'; Reccia, Mafalda Giovanna; Miele, Gennaro; Monticelli, Antonella; Scorziello, Antonella; Lembo, Francesca; Colucci D'Amato, Luca; Minchiotti, Gabriella; Avvedimento, VITTORIO ENRICO; Usiello, Alessandro; Cocozza, Sergio; Chiariotti, Lorenzo
Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells
2019 Amente, Stefano; Di Palo, Giacomo; Scala, Giovanni; Castrignanò, Tiziana; Gorini, Francesca; Cocozza, Sergio; Amoresano, Angela; Pucci, Piero; Ma, Bin; Stepanov, Irina; Lania, Luigi; Pelicci, Pier Giuseppe; Dellino, Gaetano Ivan; Majello, Barbara
eUTOPIA: SolUTion for Omics data PreprocessIng and Analysis
2019 Marwah, V. S.; Scala, G.; Kinaret, P. A. S.; Serra, A.; Alenius, H.; Fortino, V.; Greco, D.
Integration of genome-wide mRNA and miRNA expression, and DNA methylation data of three cell lines exposed to ten carbon nanomaterials
2018 Scala, Giovanni; Marwah, Veer; Kinaret, Pia; Sund, Jukka; Fortino, Vittorio; Greco, Dario
Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion
2019 Eerola, Sini K.; Santio, Niina M.; Rinne, Sanni; Kouvonen, Petri; Corthals, Garry L.; Scaravilli, Mauro; Scala, Giovanni; Serra, Angela; Greco, Dario; Ruusuvuori, Pekka; Latonen, Leena; Rainio, Eeva-Marja; Visakorpi, Tapio; Koskinen, Päivi J.
Gain-of-function CEBPE mutation causes noncanonical autoinflammatory inflammasomopathy
2019 Goos, H.; Fogarty, C. L.; Sahu, B.; Plagnol, V.; Rajamaki, K.; Nurmi, K.; Liu, X.; Einarsdottir, E.; Jouppila, A.; Pettersson, T.; Vihinen, H.; Krjutskov, K.; Saavalainen, P.; Jarvinen, A.; Muurinen, M.; Greco, D.; Scala, G.; Curtis, J.; Nordstrom, D.; Flaumenhaft, R.; Vaarala, O.; Kovanen, P. E.; Keskitalo, S.; Ranki, A.; Kere, J.; Lehto, M.; Notarangelo, L. D.; Nejentsev, S.; Eklund, K. K.; Varjosalo, M.; Taipale, J.; Seppanen, M. R. J.
Multi-omics analysis of ten carbon nanomaterials effects highlights cell type specific patterns of molecular regulation and adaptation
2018 Scala, G.; Kinaret, P.; Marwah, V.; Sund, J.; Fortino, V.; Greco, D.
Modelling DNA methylation by analyzing the individual configurations of single molecules
2016 Affinito, Ornella; Scala, Giovanni; Palumbo, Domenico; Florio, Ermanno; Monticelli, Antonella; Miele, Gennaro; Avvedimento, VITTORIO ENRICO; Usiello, Alessandro; Chiariotti, Lorenzo; Cocozza, Sergio
Cholesteatoma vs granulation tissue: a differential diagnosis by DWI-MRI apparent diffusion coefficient
2018 Cavaliere, M; Di Lullo, Antonella Miriam; Cantone, E; Scala, G; Elefante, A; Russo, C; Brunetti, L; Motta, G; Iengo, M
Il coefficiente di diffusione apparente “ADC” nella diagnosi differenziale della patologia colesteatomatosa.
2016 DI LULLO, ANTONELLA MIRIAM; Cavaliere, M; Scala, G; Capriglione, P; Iengo, M
Identification of C12orf4 as a gene for autosomal recessive intellectual disability
2017 Philips, A. K.; Pinelli, M.; de Bie, C. I.; Mustonen, A.; Maatta, T.; Arts, H. H.; Wu, K.; Roepman, R.; Moilanen, J. S.; Raza, S.; Varilo, T.; Scala, G.; Cocozza, S.; Gilissen, C.; van Gassen, K. L. I.; Jarvela, I.
Sex-related alterations of gut microbiota composition in the BTBR mouse model of autism spectrum disorder.
2017 Coretti, Lorena; Cristiano, Claudia; Florio, Ermanno; Scala, Giovanni; Lama, Adriano; Keller, Simona; Cuomo, Mariella; Russo, Roberto; Pero, Raffaela; Paciello, Orlando; MATTACE RASO, Giuseppina; Meli, Rosaria; Cocozza, Sergio; Calignano, Antonio; Chiariotti, Lorenzo; Lembo, Francesca
Towards a comprehensive view of 8-oxo-7,8-dihydro-2'-deoxyguanosine: Highlighting the intertwined roles of DNA damage and epigenetics in genomic instability
2021 Gorini, Francesca; Scala, Giovanni; Cooke, Marcus S; Majello, Barbara; Amente, Stefano
ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons
2016 Scala, Giovanni; Ornella, Affinito; Palumbo, Domenico; Florio, Ermanno; Antonella, Monticelli; Miele, Gennaro; Chiariotti, Lorenzo; Cocozza, Sergio
INfORM: Inference of NetwOrk Response Modules
2018 Marwah, V. S.; Kinaret, P. A. S.; Serra, A.; Scala, G.; Lauerma, A.; Fortino, V.; Greco, D.
| Titolo | Tipologia | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|---|
| CpG islands under selective pressure are enriched with H3K4me3, H3K27ac and H3K36me3 histone modifications. | 1.1 Articolo in rivista | 2013 | Akhtar, Mm; Scala, Giovanni; Cocozza, Sergio; Miele, Gennaro; Monticelli, A. | |
| Evidence for Evolutionary and Nonevolutionary Forces Shaping the Distribution of Human Genetic Variants near Transcription Start Sites | 1.1 Articolo in rivista | 2014 | Scala, Giovanni; Affinito, Ornella; Miele, Gennaro; Antonella, Monticelli; Cocozza, Sergio | |
| A distinct group of CpG islands shows differential DNA methylation between replicas of the same cell line in vitro | 1.1 Articolo in rivista | 2013 | Cocozza, Sergio; Scala, Giovanni; Miele, Gennaro; Imma, Castaldo; Antonella, Monticelli | |
| Simulating gene-gene and gene-environment interactions in complex diseases: Gene-Environment iNteraction Simulator 2 | 1.1 Articolo in rivista | 2012 | Pinelli, Michele; Scala, Giovanni; Amato, Roberto; Cocozza, Sergio; Miele, Gennaro | |
| Continuous and discontinuous phase transitions in the evolution of a polygenic trait under stabilizing selective pressure | 1.1 Articolo in rivista | 2017 | Fierro, Annalisa; Cocozza, Sergio; Monticelli, Antonella; Scala, Giovanni; Miele, Gennaro | |
| Tracking the evolution of epialleles during neural differentiation and brain development: D-Aspartate oxidase as a model gene | 1.1 Articolo in rivista | 2016 | Florio, Ermanno; Keller, Simona; Coretti, Lorena; Affinito, Ornella; Scala, Giovanni; Errico, Francesco; Fico, Annalisa; Boscia, Francesca; Sisalli, MARIA JOSE'; Reccia, Mafalda Giovanna; Miele, Gennaro; Monticelli, Antonella; Scorziello, Antonella; Lembo, Francesca; Colucci D'Amato, Luca; Minchiotti, Gabriella; Avvedimento, VITTORIO ENRICO; Usiello, Alessandro; Cocozza, Sergio; Chiariotti, Lorenzo | |
| Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells | 1.1 Articolo in rivista | 2019 | Amente, Stefano; Di Palo, Giacomo; Scala, Giovanni; Castrignanò, Tiziana; Gorini, Francesca; Cocozza, Sergio; Amoresano, Angela; Pucci, Piero; Ma, Bin; Stepanov, Irina; Lania, Luigi; Pelicci, Pier Giuseppe; Dellino, Gaetano Ivan; Majello, Barbara | |
| eUTOPIA: SolUTion for Omics data PreprocessIng and Analysis | 1.1 Articolo in rivista | 2019 | Marwah, V. S.; Scala, G.; Kinaret, P. A. S.; Serra, A.; Alenius, H.; Fortino, V.; Greco, D. | |
| Integration of genome-wide mRNA and miRNA expression, and DNA methylation data of three cell lines exposed to ten carbon nanomaterials | 1.1 Articolo in rivista | 2018 | Scala, Giovanni; Marwah, Veer; Kinaret, Pia; Sund, Jukka; Fortino, Vittorio; Greco, Dario | |
| Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion | 1.1 Articolo in rivista | 2019 | Eerola, Sini K.; Santio, Niina M.; Rinne, Sanni; Kouvonen, Petri; Corthals, Garry L.; Scaravilli, Mauro; Scala, Giovanni; Serra, Angela; Greco, Dario; Ruusuvuori, Pekka; Latonen, Leena; Rainio, Eeva-Marja; Visakorpi, Tapio; Koskinen, Päivi J. | |
| Gain-of-function CEBPE mutation causes noncanonical autoinflammatory inflammasomopathy | 1.1 Articolo in rivista | 2019 | Goos, H.; Fogarty, C. L.; Sahu, B.; Plagnol, V.; Rajamaki, K.; Nurmi, K.; Liu, X.; Einarsdottir, E.; Jouppila, A.; Pettersson, T.; Vihinen, H.; Krjutskov, K.; Saavalainen, P.; Jarvinen, A.; Muurinen, M.; Greco, D.; Scala, G.; Curtis, J.; Nordstrom, D.; Flaumenhaft, R.; Vaarala, O.; Kovanen, P. E.; Keskitalo, S.; Ranki, A.; Kere, J.; Lehto, M.; Notarangelo, L. D.; Nejentsev, S.; Eklund, K. K.; Varjosalo, M.; Taipale, J.; Seppanen, M. R. J. | |
| Multi-omics analysis of ten carbon nanomaterials effects highlights cell type specific patterns of molecular regulation and adaptation | 1.1 Articolo in rivista | 2018 | Scala, G.; Kinaret, P.; Marwah, V.; Sund, J.; Fortino, V.; Greco, D. | |
| Modelling DNA methylation by analyzing the individual configurations of single molecules | 1.1 Articolo in rivista | 2016 | Affinito, Ornella; Scala, Giovanni; Palumbo, Domenico; Florio, Ermanno; Monticelli, Antonella; Miele, Gennaro; Avvedimento, VITTORIO ENRICO; Usiello, Alessandro; Chiariotti, Lorenzo; Cocozza, Sergio | |
| Cholesteatoma vs granulation tissue: a differential diagnosis by DWI-MRI apparent diffusion coefficient | 1.1 Articolo in rivista | 2018 | Cavaliere, M; Di Lullo, Antonella Miriam; Cantone, E; Scala, G; Elefante, A; Russo, C; Brunetti, L; Motta, G; Iengo, M | |
| Il coefficiente di diffusione apparente “ADC” nella diagnosi differenziale della patologia colesteatomatosa. | 4.2 Abstract in Atti di convegno | 2016 | DI LULLO, ANTONELLA MIRIAM; Cavaliere, M; Scala, G; Capriglione, P; Iengo, M | |
| Identification of C12orf4 as a gene for autosomal recessive intellectual disability | 1.1 Articolo in rivista | 2017 | Philips, A. K.; Pinelli, M.; de Bie, C. I.; Mustonen, A.; Maatta, T.; Arts, H. H.; Wu, K.; Roepman, R.; Moilanen, J. S.; Raza, S.; Varilo, T.; Scala, G.; Cocozza, S.; Gilissen, C.; van Gassen, K. L. I.; Jarvela, I. | |
| Sex-related alterations of gut microbiota composition in the BTBR mouse model of autism spectrum disorder. | 1.1 Articolo in rivista | 2017 | Coretti, Lorena; Cristiano, Claudia; Florio, Ermanno; Scala, Giovanni; Lama, Adriano; Keller, Simona; Cuomo, Mariella; Russo, Roberto; Pero, Raffaela; Paciello, Orlando; MATTACE RASO, Giuseppina; Meli, Rosaria; Cocozza, Sergio; Calignano, Antonio; Chiariotti, Lorenzo; Lembo, Francesca | |
| Towards a comprehensive view of 8-oxo-7,8-dihydro-2'-deoxyguanosine: Highlighting the intertwined roles of DNA damage and epigenetics in genomic instability | 1.1 Articolo in rivista | 2021 | Gorini, Francesca; Scala, Giovanni; Cooke, Marcus S; Majello, Barbara; Amente, Stefano | |
| ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons | 1.1 Articolo in rivista | 2016 | Scala, Giovanni; Ornella, Affinito; Palumbo, Domenico; Florio, Ermanno; Antonella, Monticelli; Miele, Gennaro; Chiariotti, Lorenzo; Cocozza, Sergio | |
| INfORM: Inference of NetwOrk Response Modules | 1.1 Articolo in rivista | 2018 | Marwah, V. S.; Kinaret, P. A. S.; Serra, A.; Scala, G.; Lauerma, A.; Fortino, V.; Greco, D. |