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Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries 1.1 Articolo in rivista 2024 Piperni, Elisa; Nguyen, Long H.; Manghi, Paolo; Kim, Hanseul; Pasolli, Edoardo; Andreu-Sánchez, Sergio; Arrè, Alberto; Bermingham, Kate M.; Blanco-Míguez, Aitor; Manara, Serena; Valles-Colomer, Mireia; Bakker, Elco; Busonero, Fabio; Davies, Richard; Fiorillo, Edoardo; Giordano, Francesca; Hadjigeorgiou, George; Leeming, Emily R.; Lobina, Monia; Masala, Marco; Maschio, Andrea; Mciver, Lauren J.; Pala, Mauro; Pitzalis, Maristella; Wolf, Jonathan; Fu, Jingyuan; Zhernakova, Alexandra; Cacciò, Simone M.; Cucca, Francesco; Berry, Sarah E.; Ercolini, Danilo; Chan, Andrew T.; Huttenhower, Curtis; Spector, Tim D.; Segata, Nicola; Asnicar, Francesco
Fermented foods, their microbiome and its potential in boosting human health 1.8 Articolo in rassegna (review) 2024 Valentino, Vincenzo; Magliulo, Raffaele; Farsi, Dominic; Cotter, Paul D.; O'Sullivan, Orla; Ercolini, Danilo; De , ; Filippis, Francesca
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome 1.1 Articolo in rivista 2024 Carlino, Niccolò; Blanco-Míguez, Aitor; Punčochář, Michal; Mengoni, Claudia; Pinto, Federica; Tatti, Alessia; Manghi, Paolo; Armanini, Federica; Avagliano, Michele; Barcenilla, Coral; Breselge, Samuel; Cabrera-Rubio, Raul; Calvete-Torre, Inés; Coakley, Mairéad; Cobo-Díaz, José F.; De Filippis, Francesca; Dey, Hrituraj; Leech, John; Klaassens, Eline S.; Knobloch, Stephen; O'Neil, Dominic; Quijada, Narciso M.; Sabater, Carlos; Skírnisdóttir, Sigurlaug; Valentino, Vincenzo; Walsh, Liam; Alvarez-Ordóñez, Avelino; Alvarez, Pablo; Antonielli, Livio; Arendt, Elke; Armanini, Federica; Aubry, Aurelie; Baelum, Jacob; Barcenilla, Coral; Belanche, Alejandro; Benavent-Gil, Yaiza; Blake, Tony; Blanco-Míguez, Aitor; Bongoni, Radhika; Boyer, Mickael; Brennan, Fiona; Breselge, Samuel; Briem, Helgi; Butler, Derek; Calvete-Torre, Inés; Carballo, Omar Cristobal; Cardinal, Mireille; Carlino, Niccolò; Chervaux, Christian; Chopin, Christine; Clotaire, Natallia; Coakley, Mairead; Cobo-Díaz, José Francisco; Codd, Jim; Conroy, Stephen; Corral-Jara, Karla Fabiola; Corral-Jara, Karla-Fabiola; Cotter, Paul D.; Coyne, Gerard; Coyne, Gerard; Creevey, Chris; Cuevas, Patricia D.; Curran, Brendan; Delgado, Susana; Derde, Liesbeth; Derrien, Muriel; Ercolini, Danilo; Exposito, Ruth Gomez; López Fernández, María Mercedes; De Filippis, Francesca; Fordham, Daniel; Galy, Hubert; Gavriilidou, Asimenia; Gunnarsson, Oddur; Hanson, Buck; Hermes, Gerben; Huang, Rongcai; Huws, Sharon; Ikoyi, Israel; Jaeger, Alice; Jeffery, Ian; Jérôme, Marc; Juan, Pierre-Alexandre; Kenny, David; Kers, Annelies; Khinouche, Karim-Franck; Kirwan, Stuart; Klaassens, Eline S.; Knobloch, Stephen; Kolbeinsson, Kristinn; Kolypczuk, Laetitia; Kostic, Tanja; Ledda, Fabio; Leech, John; Lehmann, Doerte; Leroi, Françoise; Lewis, Eva; Ley, Johanna; Lucic, Eva; Lynch, Kieran; Mace, Sabrina; MacLaren-Lee, Iain; Mahler de Sanchez, Lisa; Marchart, Juergen; Margolles, Abelardo; Marteinsson, Viggó Thór; Masetti, Giulia; Mcgovern, Fiona; Mchugh, Noirin; Mcloughlin, Steven; Meehan, Dara; Mølbak, Lars; Monin, Thomas; Moreno, Javier; Morgavi, Diego; Morrison, Steven; Müench, Steffen; Ramos Neves, Ana Rute; Neylon, Emma; Nyhan, Laura; O'Kelly, Rhona; O'Neil, Dominic; O'Toole, Paul; Ortiz-Chura, Abimael; Palma, Juan Manuel; Pasolli, Edoardo; Passerini, Delphine; Pastar, Milica; Pinto, Federica; Pirovano, Walter; Plans, Olga; Policht, Marion; Pop, Aurel; Pop, Bianca; Popova, Milka; Prieto, Miguel; Quijada, Narciso M.; Reiss, Antje; Romero, Pedro; Ruas-Madiedo, Patricia; Rubino, Francesco; Rubio, Raul Cabrera; Ruiz, Lorena; Ryan, Angela; Ryan, Clodagh; Sabater, Carlos; Sahin, Aylin; Salaun, Cecile; Santos, Fernanda Godoy; Schneider, Carolin; Segata, Nicola; Selberherr, Evelyne; Sessitsch, Angela; Skírnisdóttir, Sigurlaug; Smidt, Hauke; Smith, Paul; Sprenger-Haussels, Markus; Tapio, Ilma; Tap, Julien; Valentino, Vincenzo; Wagner, Martin; Walsh, Aaron; Walsh, Liam; Waters, Sinead M.; Willcocks, Spike; Yáñez-Ruiz, David R.; Yan, Tianhai; Yap, Min; Zannini, Emanuele; Zuliani, Véronique; Alvarez-Ordóñez, Avelino; Asnicar, Francesco; Fackelmann, Gloria; Heidrich, Vitor; Margolles, Abelardo; Marteinsson, Viggó Thór; Rota Stabelli, Omar; Wagner, Martin; Ercolini, Danilo; Cotter, Paul D.; Segata, Nicola; Pasolli, Edoardo
Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments 1.1 Articolo in rivista 2024 Barcenilla, Coral; Cobo-Díaz, José F.; De Filippis, Francesca; Valentino, Vincenzo; Cabrera Rubio, Raul; O’Neil, Dominic; Mahler de Sanchez, Lisa; Armanini, Federica; Carlino, Niccolò; Blanco-Míguez, Aitor; Pinto, Federica; Calvete-Torre, Inés; Sabater, Carlos; Delgado, Susana; Ruas-Madiedo, Patricia; Quijada, Narciso M.; Dzieciol, Monika; Skírnisdóttir, Sigurlaug; Knobloch, Stephen; Puente, Alba; López, Mercedes; Prieto, Miguel; Marteinsson, Viggó Thór; Wagner, Martin; Margolles, Abelardo; Segata, Nicola; Cotter, Paul D.; Ercolini, Danilo; Alvarez-Ordóñez, Avelino
Microbiome dynamics, antibiotic resistance gene patterns and spoilage-associated genomic potential in fresh anchovies stored in different conditions 1.1 Articolo in rivista 2024 Sequino, Giuseppina; Valentino, Vincenzo; Esposito, Alessia; Volpe, Stefania; Torrieri, Elena; De Filippis, Francesca; Ercolini, Danilo
Exposure to environmental pollutants selects for xenobiotic-degrading functions in the human gut microbiome 1.1 Articolo in rivista 2024 De Filippis, Francesca; Valentino, Vincenzo; Sequino, Giuseppina; Borriello, Giorgia; Riccardi, Marita Georgia; Pierri, Biancamaria; Cerino, Pellegrino; Pizzolante, Antonio; Pasolli, Edoardo; Esposito, Mauro; Limone, Antonio; Ercolini, Danilo
Microbiome signatures associated with flavor development differentiate Protected Designation of origin water Buffalo Mozzarella cheese from different production areas 1.1 Articolo in rivista 2024 Magliulo, Raffaele; Valentino, Vincenzo; Balivo, Andrea; Esposito, Alessia; Genovese, Alessandro; Ercolini, Danilo; De Filippis, Francesca
Microbiome mapping in beef processing reveals safety-relevant variations in microbial diversity and genomic features 1.1 Articolo in rivista 2024 Sequino, Giuseppina; Cobo-Diaz, José F.; Valentino, Vincenzo; Tassou, Chrysoula; Volpe, Stefania; Torrieri, Elena; Nychas, George-John; Álvarez Ordóñez, Avelino; Ercolini, Danilo; De Filippis, Francesca
Relationships between diet and gut microbiome in an Italian and Dutch cohort: does the dietary protein to fiber ratio play a role? 1.1 Articolo in rivista 2024 Tagliamonte, Silvia; Puhlmann, Marie-Luise; De Filippis, Francesca; Guerville, Mathilde; Ercolini, Danilo; Vitaglione, Paola
Aetiology, risk factors and microbiota composition in children with prolonged diarrhoea: A prospective case–controlled cohort study 1.1 Articolo in rivista 2024 LO VECCHIO, Andrea; Quitadamo, Paolo; Poeta, Marco; Buccigrossi, Vittoria; Siani, Paolo; Cioffi, Valentina; Ercolini, Danilo; Guarino, Alfredo
Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities 1.1 Articolo in rivista 2024 De Filippis, Francesca; Valentino, Vincenzo; Yap, Min; Cabrera-Rubio, Raul; Barcenilla, Coral; Carlino, Niccolò; Cobo-Díaz, José F.; Quijada, Narciso Martín; Calvete-Torre, Inés; Ruas-Madiedo, Patricia; Sabater, Carlos; Sequino, Giuseppina; Pasolli, Edoardo; Wagner, Martin; Margolles, Abelardo; Segata, Nicola; Álvarez-Ordóñez, Avelino; Cotter, Paul D.; Ercolini, Danilo
Gaba-producing lactobacilli boost cognitive reactivity to negative mood without improving cognitive performance: A human Double-Blind Placebo-Controlled Cross-Over study 1.1 Articolo in rivista 2024 Casertano, Melania; Dekker, Matthijs; Valentino, Vincenzo; De Filippis, Francesca; Fogliano, Vincenzo; Ercolini, Danilo
Determination of the effect of the bacteriocin enterocin AS-48 on the microbial loads and bacterial diversity of blueberries 1.1 Articolo in rivista 2023 Rodríguez López, Javier; Grandeburgos, María José; De Filippis, Francesca; Pérez Pulido, Rubén; Ercolini, Danilo; Galvez, Antonio; Lucas, Rosario
Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions 1.1 Articolo in rivista 2023 De Filippis, F.; Bonelli, M.; Bruno, D.; Sequino, G.; Montali, A.; Reguzzoni, M.; Pasolli, E.; Savy, D.; Cangemi, S.; Cozzolino, V.; Tettamanti, G.; Ercolini, D.; Casartelli, M.; Caccia, S.
Milk protein digestion and the gut microbiome influence gastrointestinal discomfort after cow milk consumption in healthy subjects 1.1 Articolo in rivista 2023 Tagliamonte, Silvia; BARONE LUMAGA, Roberta; DE FILIPPIS, Francesca; Valentino, Vincenzo; Ferracane, Rosalia; Guerville, Mathilde; Gandolfi, Ivana; Barbara, Giovanni; Ercolini, Danilo; Vitaglione, Paola
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions 1.1 Articolo in rivista 2023 Blanco-Míguez, Aitor; Gálvez, Eric J. C.; Pasolli, Edoardo; De Filippis, Francesca; Amend, Lena; Huang, Kun D.; Manghi, Paolo; Lesker, Till-Robin; Riedel, Thomas; Cova, Linda; Punčochář, Michal; Thomas, Andrew Maltez; Valles-Colomer, Mireia; Schober, Isabel; Hitch, Thomas C. A.; Clavel, Thomas; Berry, Sarah E.; Davies, Richard; Wolf, Jonathan; Spector, Tim D.; Overmann, Jörg; Tett, Adrian; Ercolini, Danilo; Segata, Nicola; Strowig, Till
Psychrotrophic Bacteria Equipped with Virulence and Colonization Traits Populate the Ice Cream Manufacturing Environment 1.1 Articolo in rivista 2023 Valentino, Vincenzo; De Filippis, Francesca; Sequino, Giuseppina; Ercolini, Danilo
The chemistry of gut microbiome-derived lipopolysaccharides impacts on the occurrence of food allergy in the pediatric age 1.1 Articolo in rivista 2023 Di Lorenzo, Flaviana; Paparo, Lorella; Pisapia, Laura; Oglio, Franca; Pither, Molly Dorothy; Cirella, Roberta; Nocerino, Rita; Carucci, Laura; Silipo, Alba; de Filippis, Francesca; Ercolini, Danilo; Molinaro, Antonio; Berni Canani, Roberto
Food Neophobia and scarce olfactory performances are linked to oral microbiota 1.1 Articolo in rivista 2022 Valentino, Vincenzo; De Filippis, Francesca; Menghi, Leonardo; Gasperi, Flavia; Ercolini, Danilo
Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa 1.1 Articolo in rivista 2022 Giliberti, Renato; Cavaliere, Sara; Mauriello, Italia Elisa; Ercolini, Danilo; Pasolli, Edoardo
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