Sfoglia per Autore
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
2019 Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, João Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola
Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets
2019 De Filippis, Francesca; Pasolli, Edoardo; Tett, Adrian; Tarallo, Sonia; Naccarati, Alessio; De Angelis, Maria; Neviani, Erasmo; Cocolin, Luca; Gobbetti, Marco; Segata, Nicola; Ercolini, Danilo
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
2019 Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola
Post-Disaster Building Database Updating Using Automated Deep Learning: An Integration of Pre-Disaster OpenStreetMap and Multi-Temporal Satellite Data
2019 Ghaffarian, Saman; Kerle, Norman; Pasolli, Edoardo; Jokar Arsanjani, Jamal
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
2019 Manara, S.; Asnicar, F.; Beghini, F.; Bazzani, D.; Cumbo, F.; Zolfo, M.; Nigro, E.; Karcher, N.; Manghi, P.; Metzger, M. I.; Pasolli, E.; Segata, N.
Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem
2018 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
2018 Yassour, Moran; Jason, Eeva; Hogstrom, Larson J.; Arthur, Timothy D.; Tripathi, Surya; Siljander, Heli; Selvenius, Jenni; Oikarinen, Sami; Hyöty, Heikki; Virtanen, Suvi M.; Ilonen, Jorma; Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Segata, Nicola; Vlamakis, Hera; Lander, Eric S.; Huttenhower, Curtis; Knip, Mikael; Xavier, Ramnik J.
Satellite Image Time Series: Mathematical Models for Data Mining and Missing Data Restoration
2018 Méger, Nicolas; Pasolli, Edoardo; Rigotti, Christophe; Trouvé, Emmanuel; Melgani, Farid
Habitual diet selects distinct genetic and functional subtypes of intestinal Prevotella copri
2018 De Filippis, F.; Pasolli, Edoardo; Tett, A.; De Angelis, M.; Neviani, E.; Turroni, S.; Cocolin, L.; Gobbetti, M.; Segata, N.; Ercolini, D.
Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital
2018 Manara, Serena; Pasolli, Edoardo; Dolce, Daniela; Ravenni, Novella; Campana, Silvia; Armanini, Federica; Asnicar, Francesco; Mengoni, Alessio; Galli, Luisa; Montagnani, Carlotta; Venturini, Elisabetta; Rota-Stabelli, Omar; Grandi, Guido; Taccetti, Giovanni; Segata, Nicola
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
2018 Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; De Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, Carmen Maria; Koren, Omry; Tateo, Saverio; Soffiati, Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicola
Profiling microbial strains in urban environments using metagenomic sequencing data
2018 Zolfo, Moreno; Asnicar, Francesco; Manghi, Paolo; Pasolli, Edoardo; Tett, Adrian; Segata, Nicola
Accessible, curated metagenomic data through ExperimentHub
2017 Pasolli, Edoardo; Schiffer, Lucas; Manghi, Paolo; Renson, Audrey; Obenchain, Valerie; Truong, Duy Tin; Beghini, Francesco; Malik, Faizan; Ramos, Marcel; Dowd, Jennifer B; Huttenhower, Curtis; Morgan, Martin; Segata, Nicola; Waldron, Levi
Large-scale phylogenomics of the Lactobacillus casei group highlights taxonomic inconsistencies and reveals novel clade-associated features
2017 Wuyts, Sander; Wittouck, Stijn; De Boeck, Ilke; Allonsius, Camille N.; Pasolli, Edoardo; Segata, Nicola; Lebeer, Sarah
Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater
2017 Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola
Microbial strain-level population structure & genetic diversity from metagenomes
2017 Truong, Duy Tin; Tett, Adrian; Pasolli, Edoardo; Huttenhower, Curtis; Segata, Nicola
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
2017 Tett, Adrian; Pasolli, Edoardo; Farina, Stefania; Truong, Duy Tin; Asnicar, Francesco; Zolfo, Moreno; Beghini, Francesco; Armanini, Federica; Jousson, Olivier; De Sanctis, Veronica; Bertorelli, Roberto; Girolomoni, Giampiero; Cristofolini, Mario; Segata, Nicola
Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission
2017 Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Armanini, Federica; Turroni, Francesca; James, Kieran; Ferretti, Pamela; Gorfer, Valentina; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Zolfo, Moreno; Viappiani, Alice; Pasolli, Edoardo; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Fedi, Sabina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Soffiati, Massimo; Tateo, Saverio; Pedrotti, Anna; Segata, Nicola; Van Sinderen, Douwe; Ventura, Marco
Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome
2017 Beghini, Francesco; Pasolli, Edoardo; Truong, Tin Duy; Putignani, Lorenza; Cacciò, Simone M.; Segata, Nicola
Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
2016 Pasolli, Edoardo; Truong, Duy Tin; Malik, Faizan; Waldron, Levi; Segata, Nicola
| Titolo | Tipologia | Data di pubblicazione | Autore(i) | File |
|---|---|---|---|---|
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation | 1.1 Articolo in rivista | 2019 | Thomas, Andrew Maltez; Manghi, Paolo; Asnicar, Francesco; Pasolli, Edoardo; Armanini, Federica; Zolfo, Moreno; Beghini, Francesco; Manara, Serena; Karcher, Nicolai; Pozzi, Chiara; Gandini, Sara; Serrano, Davide; Tarallo, Sonia; Francavilla, Antonio; Gallo, Gaetano; Trompetto, Mario; Ferrero, Giulio; Mizutani, Sayaka; Shiroma, Hirotsugu; Shiba, Satoshi; Shibata, Tatsuhiro; Yachida, Shinichi; Yamada, Takuji; Wirbel, Jakob; Schrotz-King, Petra; Ulrich, Cornelia M.; Brenner, Hermann; Arumugam, Manimozhiyan; Bork, Peer; Zeller, Georg; Cordero, Francesca; Dias-Neto, Emmanuel; Setubal, João Carlos; Tett, Adrian; Pardini, Barbara; Rescigno, Maria; Waldron, Levi; Naccarati, Alessio; Segata, Nicola | |
| Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets | 1.1 Articolo in rivista | 2019 | De Filippis, Francesca; Pasolli, Edoardo; Tett, Adrian; Tarallo, Sonia; Naccarati, Alessio; De Angelis, Maria; Neviani, Erasmo; Cocolin, Luca; Gobbetti, Marco; Segata, Nicola; Ercolini, Danilo | |
| Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle | 1.1 Articolo in rivista | 2019 | Pasolli, Edoardo; Asnicar, Francesco; Manara, Serena; Zolfo, Moreno; Karcher, Nicolai; Armanini, Federica; Beghini, Francesco; Manghi, Paolo; Tett, Adrian; Ghensi, Paolo; Collado, Maria Carmen; Rice, Benjamin L.; Dulong, Casey; Morgan, Xochitl C.; Golden, Christopher D.; Quince, Christopher; Huttenhower, Curtis; Segata, Nicola | |
| Post-Disaster Building Database Updating Using Automated Deep Learning: An Integration of Pre-Disaster OpenStreetMap and Multi-Temporal Satellite Data | 1.1 Articolo in rivista | 2019 | Ghaffarian, Saman; Kerle, Norman; Pasolli, Edoardo; Jokar Arsanjani, Jamal | |
| Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species | 1.1 Articolo in rivista | 2019 | Manara, S.; Asnicar, F.; Beghini, F.; Bazzani, D.; Cumbo, F.; Zolfo, M.; Nigro, E.; Karcher, N.; Manghi, P.; Metzger, M. I.; Pasolli, E.; Segata, N. | |
| Draft genome sequences of novel Pseudomonas, Flavobacterium, and Sediminibacterium species strains from a freshwater ecosystem | 1.1 Articolo in rivista | 2018 | Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola | |
| Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life | 1.1 Articolo in rivista | 2018 | Yassour, Moran; Jason, Eeva; Hogstrom, Larson J.; Arthur, Timothy D.; Tripathi, Surya; Siljander, Heli; Selvenius, Jenni; Oikarinen, Sami; Hyöty, Heikki; Virtanen, Suvi M.; Ilonen, Jorma; Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Segata, Nicola; Vlamakis, Hera; Lander, Eric S.; Huttenhower, Curtis; Knip, Mikael; Xavier, Ramnik J. | |
| Satellite Image Time Series: Mathematical Models for Data Mining and Missing Data Restoration | 2.1 Contributo in volume (Capitolo o Saggio) | 2018 | Méger, Nicolas; Pasolli, Edoardo; Rigotti, Christophe; Trouvé, Emmanuel; Melgani, Farid | |
| Habitual diet selects distinct genetic and functional subtypes of intestinal Prevotella copri | 4.2 Abstract in Atti di convegno | 2018 | De Filippis, F.; Pasolli, Edoardo; Tett, A.; De Angelis, M.; Neviani, E.; Turroni, S.; Cocolin, L.; Gobbetti, M.; Segata, N.; Ercolini, D. | |
| Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital | 1.1 Articolo in rivista | 2018 | Manara, Serena; Pasolli, Edoardo; Dolce, Daniela; Ravenni, Novella; Campana, Silvia; Armanini, Federica; Asnicar, Francesco; Mengoni, Alessio; Galli, Luisa; Montagnani, Carlotta; Venturini, Elisabetta; Rota-Stabelli, Omar; Grandi, Guido; Taccetti, Giovanni; Segata, Nicola | |
| Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome | 1.1 Articolo in rivista | 2018 | Ferretti, Pamela; Pasolli, Edoardo; Tett, Adrian; Asnicar, Francesco; Gorfer, Valentina; Fedi, Sabina; Armanini, Federica; Truong, Duy Tin; Manara, Serena; Zolfo, Moreno; Beghini, Francesco; Bertorelli, Roberto; De Sanctis, Veronica; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Turroni, Francesca; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Viappiani, Alice; Yassour, Moran; Vlamakis, Hera; Xavier, Ramnik; Collado, Carmen Maria; Koren, Omry; Tateo, Saverio; Soffiati, Massimo; Pedrotti, Anna; Ventura, Marco; Huttenhower, Curtis; Bork, Peer; Segata, Nicola | |
| Profiling microbial strains in urban environments using metagenomic sequencing data | 1.1 Articolo in rivista | 2018 | Zolfo, Moreno; Asnicar, Francesco; Manghi, Paolo; Pasolli, Edoardo; Tett, Adrian; Segata, Nicola | |
| Accessible, curated metagenomic data through ExperimentHub | 1.1 Articolo in rivista | 2017 | Pasolli, Edoardo; Schiffer, Lucas; Manghi, Paolo; Renson, Audrey; Obenchain, Valerie; Truong, Duy Tin; Beghini, Francesco; Malik, Faizan; Ramos, Marcel; Dowd, Jennifer B; Huttenhower, Curtis; Morgan, Martin; Segata, Nicola; Waldron, Levi | |
| Large-scale phylogenomics of the Lactobacillus casei group highlights taxonomic inconsistencies and reveals novel clade-associated features | 1.1 Articolo in rivista | 2017 | Wuyts, Sander; Wittouck, Stijn; De Boeck, Ilke; Allonsius, Camille N.; Pasolli, Edoardo; Segata, Nicola; Lebeer, Sarah | |
| Draft genome sequence of the planktic cyanobacterium Tychonema bourrellyi, isolated from Alpine lentic freshwater | 1.1 Articolo in rivista | 2017 | Pinto, Federica; Tett, Adrian; Armanini, Federica; Asnicar, Francesco; Boscaini, Adriano; Pasolli, Edoardo; Zolfo, Moreno; Donati, Claudio; Salmaso, Nico; Segata, Nicola | |
| Microbial strain-level population structure & genetic diversity from metagenomes | 1.1 Articolo in rivista | 2017 | Truong, Duy Tin; Tett, Adrian; Pasolli, Edoardo; Huttenhower, Curtis; Segata, Nicola | |
| Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis | 1.1 Articolo in rivista | 2017 | Tett, Adrian; Pasolli, Edoardo; Farina, Stefania; Truong, Duy Tin; Asnicar, Francesco; Zolfo, Moreno; Beghini, Francesco; Armanini, Federica; Jousson, Olivier; De Sanctis, Veronica; Bertorelli, Roberto; Girolomoni, Giampiero; Cristofolini, Mario; Segata, Nicola | |
| Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission | 1.1 Articolo in rivista | 2017 | Duranti, Sabrina; Lugli, Gabriele Andrea; Mancabelli, Leonardo; Armanini, Federica; Turroni, Francesca; James, Kieran; Ferretti, Pamela; Gorfer, Valentina; Ferrario, Chiara; Milani, Christian; Mangifesta, Marta; Anzalone, Rosaria; Zolfo, Moreno; Viappiani, Alice; Pasolli, Edoardo; Bariletti, Ilaria; Canto, Rosarita; Clementi, Rosanna; Cologna, Marina; Crifò, Tiziana; Cusumano, Giuseppina; Fedi, Sabina; Gottardi, Stefania; Innamorati, Claudia; Masè, Caterina; Postai, Daniela; Savoi, Daniela; Soffiati, Massimo; Tateo, Saverio; Pedrotti, Anna; Segata, Nicola; Van Sinderen, Douwe; Ventura, Marco | |
| Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome | 1.1 Articolo in rivista | 2017 | Beghini, Francesco; Pasolli, Edoardo; Truong, Tin Duy; Putignani, Lorenza; Cacciò, Simone M.; Segata, Nicola | |
| Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights | 1.1 Articolo in rivista | 2016 | Pasolli, Edoardo; Truong, Duy Tin; Malik, Faizan; Waldron, Levi; Segata, Nicola |
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