The increasing number of novel theoretical and numerical tools developed in the field of systems biology requires more and more quantitative data and system-level knowledge. On the other hand, while biotechnologies have greatly evolved during the last decade, the time and cost required for experimental measurements, especially in the case of time-series data, are still rather high. In-silico models can overcome these drawbacks, provided they are realistic enough to produce valuable experimental data useful to test and validate reverse engineering algorithms. In the present work, a novel approach for the generation of random in-silico models of biological interaction systems is proposed. Interaction network models are automatically generated by means of cellular automata and properties common to real biological networks are reproduced as emergent properties of complex systems.

Emergence of system-level properties in biological networks from cellular automata evolution / Vescio, Basilio; Cosentino, Carlo; Amato, Francesco. - (2010), pp. 778-783. ( 18th Mediterranean Conference on Control and Automation, MED'10 Marrakech, MAROC 23-25 giugno 2010) [10.1109/MED.2010.5547776].

Emergence of system-level properties in biological networks from cellular automata evolution

Amato, Francesco
2010

Abstract

The increasing number of novel theoretical and numerical tools developed in the field of systems biology requires more and more quantitative data and system-level knowledge. On the other hand, while biotechnologies have greatly evolved during the last decade, the time and cost required for experimental measurements, especially in the case of time-series data, are still rather high. In-silico models can overcome these drawbacks, provided they are realistic enough to produce valuable experimental data useful to test and validate reverse engineering algorithms. In the present work, a novel approach for the generation of random in-silico models of biological interaction systems is proposed. Interaction network models are automatically generated by means of cellular automata and properties common to real biological networks are reproduced as emergent properties of complex systems.
2010
9781424480920
Emergence of system-level properties in biological networks from cellular automata evolution / Vescio, Basilio; Cosentino, Carlo; Amato, Francesco. - (2010), pp. 778-783. ( 18th Mediterranean Conference on Control and Automation, MED'10 Marrakech, MAROC 23-25 giugno 2010) [10.1109/MED.2010.5547776].
File in questo prodotto:
File Dimensione Formato  
ThA6-04.pdf

non disponibili

Descrizione: Articolo principale
Tipologia: Documento in Post-print
Licenza: Accesso privato/ristretto
Dimensione 663.31 kB
Formato Adobe PDF
663.31 kB Adobe PDF   Visualizza/Apri   Richiedi una copia

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11588/726585
Citazioni
  • ???jsp.display-item.citation.pmc??? ND
  • Scopus 0
  • ???jsp.display-item.citation.isi??? 0
social impact