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The interdisciplinary nature of microbiome research, coupled with the generation of complex multi-omics data, makes knowledge sharing challenging. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines provide a checklist for the reporting of study information, experimental design and analytical methods within a scientific manuscript on human microbiome research. Here, in this Consensus Statement, we present the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines. The guidelines expand on STORMS and include 67 items to support the reporting and review of environmental (for example, terrestrial, aquatic, atmospheric and engineered), synthetic and non-human host-associated microbiome studies in a standardized and machine-actionable manner. Based on input from 248 researchers spanning 28 countries, we provide detailed guidance, including comparisons with STORMS, and case studies that demonstrate the usage of the STREAMS guidelines. STREAMS, like STORMS, will be a living community resource updated by the Consortium with consensus-building input of the broader community.
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies / Kelliher, Julia M.; Mirzayi, Chloe; Bordenstein, Sarah R.; Oliver, Aaron; Kellogg, Christina A.; Hatcher, Eneida L.; Berg, Maureen; Baldrian, Petr; Aljumaah, Mashael; Miller, Cassandra Maria Luz; Mungall, Christopher; Novak, Vlastimil; Palucki, Alexis; Smith, Ethan; Tabassum, Nazifa; Bonito, Gregory; Brister, J. Rodney; Chain, Patrick S. G.; Chen, Mingfei; Degregori, Samuel; Dundore-Arias, Jose Pablo; Emerson, Joanne B.; Moreira C. Fernandes, Vanessa; Flores, Roberto; Gonzalez, Antonio; Hansen, Zoe A.; Jackson, Scott A.; Moustafa, Ahmed M.; Northen, Trent R.; Pariente, Nonia; Pett-Ridge, Jennifer; Record, Sydne; Reji, Linta; Reysenbach, Anna-Louise; Rich, Virginia I.; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shabman, Reed S.; Sierra, Maria A.; Sullivan, Matthew B.; Sundaramurthy, Punithavathi; Thibault, Katherine M.; Thompson, Luke R.; Tighe, Scott; Vereen, Ethell; Null, Null; Robinson, Aaron; Sare, Abdoul R.; Oladipupo, Abdulmalik A.; Vigneron, Adrien; Shibl, Ahmed A.; De Santiago, Alejandro; Probst, Alexander J.; Navid, Ali; Mchardy, Alice C.; Clum, Alicia; Buchan, Alison; Murray, Alison; Lapidus, Alla; Araujo Serrao De Andrade, Amanda; Bremges, Andreas; Anand, Archana; Chauhan, Ashvini; Dutta, Avishek; Kumar, Bablu; Hausmann, Bela; Chassaing, Benoit; Tierney, Braden T.; Hedlund, Brian P.; Chalifour, Bridget; Hanson, Buck T.; Wolz, Carly Muletz; Ettinger, Cassandra L.; Pan, Chongle; Robinson, Chris; Quiroga, Christian Hodar; Moissl-Eichinger, Christine; Hunter, Christopher; Schadt, Christopher; Ouzounis, Christos; Herbold, Craig W.; Zuniga, Cristal; Cecilia, Cruz Mercedes; Huttenhower, Curtis; Taylor, D. Lee; Mcdonald, Daniel; Sprockett, Daniel D.; Schachtman, Daniel P.; Zhang, Dennis J.; Metze, Dennis; Coleman-Derr, Devin; Merges, Dominik; Walker, Donald M.; Parks, Donovan H.; Jaiswal, Durgesh Kumar; Kiledal, E. Anders; Pasolli, Edoardo; Kuhn, Eduardo Vinicius; Wood-Charlson, Elisha; Barnhart, Elliott; Chisari, Emanuele; Skoog, Emilie J.; Graham, Emily B.; Wissel, Emily F.; Davenport, Emily R.; St. John, Emily; Cavanna, Eric; Young, Erica; Ganda, Erika; Lauro, Federico M.; Asnicar, Francesco; Rodriguez, Francisca E.; Dini-Andreote, Francisco; Artz, Frederik; Bak, Frederik; Schulz, Frederik; Canto-Encalada, Gabriela; Trubl, Gareth; Pold, Grace; Iraola, Gregorio; Ehau-Taumaunu, Hanareia; Skeen, Heather R.; Bolivar-Torres, Hermes Hernan; Cadillo-Quiroz, Hinsby; Bik, Holly M.; Forteza, Imelda; Keenum, Ishi; Oduwole, Iyanu; Saunders, Jaci; Gilbert, Jack A.; Daniels, Jada; Henriksen, James R.; Hariharan, Janani; Rothman, Jason A.; Puig, Jaume; Kimbrel, Jeffrey; Mercado-Blanco, Jesús; Guo, Jiarong; Setubal, Joao Carlos; Swift, Joel F.; Krause, Johannes R.; Klassen, Jonathan L.; Bisanz, Jordan E.; Mazza Rodrigues, Jorge L.; Balcazar, Jose L.; Neufeld, Josh D.; Sykes, Brooke E.; Watts, Joy; Van Wyk, Judson; Debelius, Justine; Prime, Kaelan J.; Anantharaman, Karthik; Raman, Karthik; Mcmahon, Katherine D.; Goodwin, Kelly; Pham, Kent; Yanuka-Golub, Keren; Myers, Kevin S.; Ryon, Krista A.; Peach, Kristen; Jain, Kunal R.; Ward, L. M.; Johnson, Leah; Lemos, Leandro Nascimento; Mccue, Lee Ann; Camuy-Vélez, Lennel A.; Waldron, Levi; Caesar, Lilian; Zhao, Liping; Karstens, Lisa; Rodriguez-Rubio, Lorena; Muniesa, Maite; Dave, Maneesh; Van Goethem, Marc W.; Barbero, María Dolores Ramos; Pachiadaki, Maria; Lozada, Mariana; Kroeger, Marie; Mccauley, Mark; Miller, Mark A.; Grisnik, Matthew; Kellom, Matthew; Cregger, Melissa A.; Howard, Mia; Poulsen, Michael; Allen, Michelle A.; Valles-Colomer, Mireia; Seyoum, Mitiku Mihiret; Elmassry, Moamen M.; Smith, Montana; Elshahed, Mostafa S.; Varona, Natascha; Tas, Neslihan; Brereton, Nicholas J. B.; Kriefall, Nicola G.; Segata, Nicola; Youssef, Noha H.; Eyice, Ozge; Cotter, Paul D.; Turnbaugh, Peter J.; Pjevac, Petra; Pope, Phillip B.; Junier, Pilar; Sengupta, Pratyay; Handakumbura, Pubudu P.; Reiss, Rebecca A.; Saho, Reese; Longley, Reid; Corrêa Dos Santos, Renato Augusto; Mondav, Rhiannon; White, Richard Allen; Knight, Rob; Gruninger, Robert J.; Wilhelm, Roland C.; ʻanolani Alegado, Rosanna; Miller, Samantha N.; Jackrel, Sara L.; Garcia, Sarahi L.; Finks, Sarai S.; Jungbluth, Sean P.; Oh, Sehyun; Baranzini, Sergio E.; Sanchez-Carrillo, Sergio; Roesemann, Shane; Moxon, Sierra; Jensen, Sigmund; Couvillion, Sneha; Tsola, Stephania L.; Yarwood, Stephanie A.; Mundra, Sunil; Brawley, Susan H.; Hodgkins, Suzanne; Chen, Sydney; Woyke, Tanja; Nelson, Theodore M.; Mock, Thomas; Myers, Tyler; Hervey, W. Judson; Boulton, William; Nelson, William; Anthony, Winston E.; Liu, Xiao Jun A.; Peng, Xuefeng; You, Yaqi; Zhang, Ying; Yeoh, Yun Kit; Burcham, Zachary M.; Eloe-Fadrosh, Emiley A.. - In: NATURE MICROBIOLOGY. - ISSN 2058-5276. - 10:12(2025), pp. 3059-3068. [10.1038/s41564-025-02186-2]
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
Kelliher, Julia M.;Mirzayi, Chloe;Bordenstein, Sarah R.;Oliver, Aaron;Kellogg, Christina A.;Hatcher, Eneida L.;Berg, Maureen;Baldrian, Petr;Aljumaah, Mashael;Miller, Cassandra Maria Luz;Mungall, Christopher;Novak, Vlastimil;Palucki, Alexis;Smith, Ethan;Tabassum, Nazifa;Bonito, Gregory;Brister, J. Rodney;Chain, Patrick S. G.;Chen, Mingfei;Degregori, Samuel;Dundore-Arias, Jose Pablo;Emerson, Joanne B.;Moreira C. Fernandes, Vanessa;Flores, Roberto;Gonzalez, Antonio;Hansen, Zoe A.;Jackson, Scott A.;Moustafa, Ahmed M.;Northen, Trent R.;Pariente, Nonia;Pett-Ridge, Jennifer;Record, Sydne;Reji, Linta;Reysenbach, Anna-Louise;Rich, Virginia I.;Richardson, Lorna;Roux, Simon;Schriml, Lynn M.;Shabman, Reed S.;Sierra, Maria A.;Sullivan, Matthew B.;Sundaramurthy, Punithavathi;Thibault, Katherine M.;Thompson, Luke R.;Tighe, Scott;Vereen, Ethell;null, null;Robinson, Aaron;Sare, Abdoul R.;Oladipupo, Abdulmalik A.;Vigneron, Adrien;Shibl, Ahmed A.;De Santiago, Alejandro;Probst, Alexander J.;Navid, Ali;McHardy, Alice C.;Clum, Alicia;Buchan, Alison;Murray, Alison;Lapidus, Alla;Araujo Serrao de Andrade, Amanda;Bremges, Andreas;Anand, Archana;Chauhan, Ashvini;Dutta, Avishek;Kumar, Bablu;Hausmann, Bela;Chassaing, Benoit;Tierney, Braden T.;Hedlund, Brian P.;Chalifour, Bridget;Hanson, Buck T.;Wolz, Carly Muletz;Ettinger, Cassandra L.;Pan, Chongle;Robinson, Chris;Quiroga, Christian Hodar;Moissl-Eichinger, Christine;Hunter, Christopher;Schadt, Christopher;Ouzounis, Christos;Herbold, Craig W.;Zuniga, Cristal;Cecilia, Cruz Mercedes;Huttenhower, Curtis;Taylor, D. Lee;McDonald, Daniel;Sprockett, Daniel D.;Schachtman, Daniel P.;Zhang, Dennis J.;Metze, Dennis;Coleman-Derr, Devin;Merges, Dominik;Walker, Donald M.;Parks, Donovan H.;Jaiswal, Durgesh Kumar;Kiledal, E. Anders;Pasolli, Edoardo;Kuhn, Eduardo Vinicius;Wood-Charlson, Elisha;Barnhart, Elliott;Chisari, Emanuele;Skoog, Emilie J.;Graham, Emily B.;Wissel, Emily F.;Davenport, Emily R.;St. John, Emily;Cavanna, Eric;Young, Erica;Ganda, Erika;Lauro, Federico M.;Asnicar, Francesco;Rodriguez, Francisca E.;Dini-Andreote, Francisco;Artz, Frederik;Bak, Frederik;Schulz, Frederik;Canto-Encalada, Gabriela;Trubl, Gareth;Pold, Grace;Iraola, Gregorio;Ehau-Taumaunu, Hanareia;Skeen, Heather R.;Bolivar-Torres, Hermes Hernan;Cadillo-Quiroz, Hinsby;Bik, Holly M.;Forteza, Imelda;Keenum, Ishi;Oduwole, Iyanu;Saunders, Jaci;Gilbert, Jack A.;Daniels, Jada;Henriksen, James R.;Hariharan, Janani;Rothman, Jason A.;Puig, Jaume;Kimbrel, Jeffrey;Mercado-Blanco, Jesús;Guo, Jiarong;Setubal, Joao Carlos;Swift, Joel F.;Krause, Johannes R.;Klassen, Jonathan L.;Bisanz, Jordan E.;Mazza Rodrigues, Jorge L.;Balcazar, Jose L.;Neufeld, Josh D.;Sykes, Brooke E.;Watts, Joy;Van Wyk, Judson;Debelius, Justine;Prime, Kaelan J.;Anantharaman, Karthik;Raman, Karthik;McMahon, Katherine D.;Goodwin, Kelly;Pham, Kent;Yanuka-Golub, Keren;Myers, Kevin S.;Ryon, Krista A.;Peach, Kristen;Jain, Kunal R.;Ward, L. M.;Johnson, Leah;Lemos, Leandro Nascimento;McCue, Lee Ann;Camuy-Vélez, Lennel A.;Waldron, Levi;Caesar, Lilian;Zhao, Liping;Karstens, Lisa;Rodriguez-Rubio, Lorena;Muniesa, Maite;Dave, Maneesh;Van Goethem, Marc W.;Barbero, María Dolores Ramos;Pachiadaki, Maria;Lozada, Mariana;Kroeger, Marie;McCauley, Mark;Miller, Mark A.;Grisnik, Matthew;Kellom, Matthew;Cregger, Melissa A.;Howard, Mia;Poulsen, Michael;Allen, Michelle A.;Valles-Colomer, Mireia;Seyoum, Mitiku Mihiret;Elmassry, Moamen M.;Smith, Montana;Elshahed, Mostafa S.;Varona, Natascha;Tas, Neslihan;Brereton, Nicholas J. B.;Kriefall, Nicola G.;Segata, Nicola;Youssef, Noha H.;Eyice, Ozge;Cotter, Paul D.;Turnbaugh, Peter J.;Pjevac, Petra;Pope, Phillip B.;Junier, Pilar;Sengupta, Pratyay;Handakumbura, Pubudu P.;Reiss, Rebecca A.;Saho, Reese;Longley, Reid;Corrêa dos Santos, Renato Augusto;Mondav, Rhiannon;White, Richard Allen;Knight, Rob;Gruninger, Robert J.;Wilhelm, Roland C.;ʻAnolani Alegado, Rosanna;Miller, Samantha N.;Jackrel, Sara L.;Garcia, Sarahi L.;Finks, Sarai S.;Jungbluth, Sean P.;Oh, Sehyun;Baranzini, Sergio E.;Sanchez-Carrillo, Sergio;Roesemann, Shane;Moxon, Sierra;Jensen, Sigmund;Couvillion, Sneha;Tsola, Stephania L.;Yarwood, Stephanie A.;Mundra, Sunil;Brawley, Susan H.;Hodgkins, Suzanne;Chen, Sydney;Woyke, Tanja;Nelson, Theodore M.;Mock, Thomas;Myers, Tyler;Hervey, W. Judson;Boulton, William;Nelson, William;Anthony, Winston E.;Liu, Xiao Jun A.;Peng, Xuefeng;You, Yaqi;Zhang, Ying;Yeoh, Yun Kit;Burcham, Zachary M.;Eloe-Fadrosh, Emiley A.
2025
Abstract
The interdisciplinary nature of microbiome research, coupled with the generation of complex multi-omics data, makes knowledge sharing challenging. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines provide a checklist for the reporting of study information, experimental design and analytical methods within a scientific manuscript on human microbiome research. Here, in this Consensus Statement, we present the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines. The guidelines expand on STORMS and include 67 items to support the reporting and review of environmental (for example, terrestrial, aquatic, atmospheric and engineered), synthetic and non-human host-associated microbiome studies in a standardized and machine-actionable manner. Based on input from 248 researchers spanning 28 countries, we provide detailed guidance, including comparisons with STORMS, and case studies that demonstrate the usage of the STREAMS guidelines. STREAMS, like STORMS, will be a living community resource updated by the Consortium with consensus-building input of the broader community.
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11588/1019417
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Il report seguente simula gli indicatori relativi alla propria produzione scientifica in relazione alle soglie ASN 2023-2025 del proprio SC/SSD. Si ricorda che il superamento dei valori soglia (almeno 2 su 3) è requisito necessario ma non sufficiente al conseguimento dell'abilitazione. La simulazione si basa sui dati IRIS e sugli indicatori bibliometrici alla data indicata e non tiene conto di eventuali periodi di congedo obbligatorio, che in sede di domanda ASN danno diritto a incrementi percentuali dei valori. La simulazione può differire dall'esito di un’eventuale domanda ASN sia per errori di catalogazione e/o dati mancanti in IRIS, sia per la variabilità dei dati bibliometrici nel tempo. Si consideri che Anvur calcola i valori degli indicatori all'ultima data utile per la presentazione delle domande.
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