This .zip file contains 3 files: 2 PLINK files containing the genotype information and one residual file containing the phenotypic information used for this paper. - genabelLATT.tped -> Transposed ped file in PLINK format. Genotypes are already edited for MAF as declared in the paper. - genabelLATT.tfam -> Transposed map file in PLINK format, containing 529 individuals. - RESIDUALS.txt -> File containing the residuals used for the GWAS in this paper. The model used to obtain this data from raw files was: Lact_record ~ Farm + CalvYear + CalvMonth + CalvingNumber + Age + Polygenic_effect + e The "e" term was then used as dependent variable in a GWAS using qtscore function in GENABEL.
Replication Data for: Design and validation of a 90K SNP genotyping assay for the Water Buffalo (Bubalus bubalis) / Daniela, Iamartino; Ezequiel, L. NICOLAZZI; Curtis, P. VAN TASSELL; James, M. REECY; FRITZ WATERS, ERIC R.; James, E. KOLTES; Stefano, Biffani; Sonstegard, TAD S.; Steven, G. SCHROEDER; Paolo, AJMONE MARSAN; Riccardo, Negrini; Rolando, Pasquariello; Paola, Ramelli; Angelo, Coletta; Garcia, JOSÉ F.; Ahmad, Ali; Luigi, Ramunno; Cosenza, Gianfranco; Denise, A. A. DE OLIVEIRA; Marcela, G. DRUMMOND; Eduardo, Bastianetto; Pirani, Ali; Fiona, Brew; Williams, JOHN L.. - VI:(2017). [10.7910/DVN/UGA2QX]
Replication Data for: Design and validation of a 90K SNP genotyping assay for the Water Buffalo (Bubalus bubalis)
COSENZA, GIANFRANCO;
2017
Abstract
This .zip file contains 3 files: 2 PLINK files containing the genotype information and one residual file containing the phenotypic information used for this paper. - genabelLATT.tped -> Transposed ped file in PLINK format. Genotypes are already edited for MAF as declared in the paper. - genabelLATT.tfam -> Transposed map file in PLINK format, containing 529 individuals. - RESIDUALS.txt -> File containing the residuals used for the GWAS in this paper. The model used to obtain this data from raw files was: Lact_record ~ Farm + CalvYear + CalvMonth + CalvingNumber + Age + Polygenic_effect + e The "e" term was then used as dependent variable in a GWAS using qtscore function in GENABEL.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
